IL_8PPK_125
3D structure
- PDB id
- 8PPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- (4AC)G*CA(OMG)
- Length
- 5 nucleotides
- Bulged bases
- 8PPK|1|2|A|1489
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPK_125 not in the Motif Atlas
- Homologous match to IL_8C3A_458
- Geometric discrepancy: 0.1041
- The information below is about IL_8C3A_458
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
8PPK|1|2|4AC|1337
8PPK|1|2|G|1338
*
8PPK|1|2|C|1488
8PPK|1|2|A|1489
8PPK|1|2|OMG|1490
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S2
- Chain D
- 40S ribosomal protein S3
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29
- Chain j
- Nsp1
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