IL_8PPK_128
3D structure
- PDB id
- 8PPK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat-Hp-CoV Nsp1 and eIF1 bound to the human 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GCUCAGCGUG*CCGUUGAACCC
- Length
- 21 nucleotides
- Bulged bases
- 8PPK|1|2|U|1585, 8PPK|1|2|G|1587
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8PPK|1|2|G|1541
8PPK|1|2|C|1542
8PPK|1|2|U|1543
8PPK|1|2|C|1544
8PPK|1|2|A|1545
8PPK|1|2|G|1546
8PPK|1|2|C|1547
8PPK|1|2|G|1548
8PPK|1|2|U|1549
8PPK|1|2|G|1550
*
8PPK|1|2|C|1582
8PPK|1|2|C|1583
8PPK|1|2|G|1584
8PPK|1|2|U|1585
8PPK|1|2|U|1586
8PPK|1|2|G|1587
8PPK|1|2|A|1588
8PPK|1|2|A|1589
8PPK|1|2|C|1590
8PPK|1|2|C|1591
8PPK|1|2|C|1592
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain F
- 40S ribosomal protein S5
- Chain Q
- 40S ribosomal protein S16
- Chain T
- Small ribosomal subunit protein eS19
- Chain U
- 40S ribosomal protein S20
- Chain Z
- 40S ribosomal protein S25
- Chain d
- 40S ribosomal protein S29
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