IL_8PPL_013

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUACUU*AUGCCGAC

Length

14 nucleotides

Bulged bases

8PPL|1|A2|C|142, 8PPL|1|A2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPL|1|A2|G|130
8PPL|1|A2|U|140
8PPL|1|A2|A|141
8PPL|1|A2|C|142
8PPL|1|A2|U|143
8PPL|1|A2|U|144
*
8PPL|1|A2|A|175
8PPL|1|A2|U|176
8PPL|1|A2|G|177
8PPL|1|A2|C|178
8PPL|1|A2|C|179
8PPL|1|A2|G|180
8PPL|1|A2|A|181
8PPL|1|A2|C|182

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6