IL_8PPL_015

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUGU*AG(A2M)G

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_015 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.1904

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8PPL|1|A2|C|151
8PPL|1|A2|U|152
8PPL|1|A2|G|153
8PPL|1|A2|U|154
*
8PPL|1|A2|A|164
8PPL|1|A2|G|165
8PPL|1|A2|A2M|166
8PPL|1|A2|G|167

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6

Chain AY

40S ribosomal protein S24