IL_8PPL_016

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUGAC*GGA(PSU)G

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_016 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3308

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8PPL|1|A2|C|188
8PPL|1|A2|U|189
8PPL|1|A2|G|190
8PPL|1|A2|A|191
8PPL|1|A2|C|192
*
8PPL|1|A2|G|207
8PPL|1|A2|G|208
8PPL|1|A2|A|209
8PPL|1|A2|PSU|210
8PPL|1|A2|G|211

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AI

40S ribosomal protein S8