IL_8PPL_020

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8PPL|1|A2|U|328

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_020 not in the Motif Atlas

Geometric match to IL_7A0S_075

Geometric discrepancy: 0.3044

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

148

Unit IDs

8PPL|1|A2|C|322
8PPL|1|A2|C|323
*
8PPL|1|A2|G|327
8PPL|1|A2|U|328
8PPL|1|A2|G|329

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S6