IL_8PPL_022

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_022 not in the Motif Atlas

Homologous match to IL_8C3A_411

Geometric discrepancy: 0.1544

The information below is about IL_8C3A_411

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71854.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8PPL|1|A2|U|366
8PPL|1|A2|U|367
8PPL|1|A2|U|368
8PPL|1|A2|C|369
8PPL|1|A2|G|370
8PPL|1|A2|A|371
*
8PPL|1|A2|U|393
8PPL|1|A2|G|394

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AI

40S ribosomal protein S8

Chain AL

40S ribosomal protein S11