IL_8PPL_028

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

8PPL|1|A2|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_028 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.2279

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8PPL|1|A2|G|535
8PPL|1|A2|A|536
8PPL|1|A2|C|537
*
8PPL|1|A2|G|546
8PPL|1|A2|G|547
8PPL|1|A2|C|548
8PPL|1|A2|C|549

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ae

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein