IL_8PPL_031

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8PPL|1|A2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_031 not in the Motif Atlas

Geometric match to IL_5TBW_146

Geometric discrepancy: 0.3478

The information below is about IL_5TBW_146

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8PPL|1|A2|G|606
8PPL|1|A2|U|607
8PPL|1|A2|C|608
*
8PPL|1|A2|G|635
8PPL|1|A2|C|636

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S3

Chain Ae

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

Chain Aj

Host translation inhibitor nsp1