IL_8PPL_032

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

C(PSU)G*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_032 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.181

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

8PPL|1|A2|C|608
8PPL|1|A2|PSU|609
8PPL|1|A2|G|610
*
8PPL|1|A2|C|633
8PPL|1|A2|A|634
8PPL|1|A2|G|635

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AX

40S ribosomal protein S23

Chain Ae

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

Chain Aj

Host translation inhibitor nsp1