IL_8PPL_041

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_041 not in the Motif Atlas

Geometric match to IL_1G1X_005

Geometric discrepancy: 0.3394

The information below is about IL_1G1X_005

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8PPL|1|A2|C|745
8PPL|1|A2|C|746
8PPL|1|A2|U|747
*
8PPL|1|A2|A|795
8PPL|1|A2|G|796

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AH

40S ribosomal protein S7

Chain AL

40S ribosomal protein S11