IL_8PPL_049

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

8PPL|1|A2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_049 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.0952

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8PPL|1|A2|G|924
8PPL|1|A2|G|925
8PPL|1|A2|A|926
8PPL|1|A2|C|927
*
8PPL|1|A2|G|1014
8PPL|1|A2|U|1015
8PPL|1|A2|U|1016
8PPL|1|A2|U|1017
8PPL|1|A2|U|1018

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AN

40S ribosomal protein S13

Chain Ab

40S ribosomal protein S27

Chain Iy

Eukaryotic translation initiation factor 3 subunit C