IL_8PPL_055
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_055 not in the Motif Atlas
- Geometric match to IL_5J7L_037
- Geometric discrepancy: 0.0752
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8PPL|1|A2|C|1047
8PPL|1|A2|G|1048
8PPL|1|A2|A|1049
8PPL|1|A2|A|1050
8PPL|1|A2|G|1051
*
8PPL|1|A2|C|1067
8PPL|1|A2|G|1068
8PPL|1|A2|U|1069
8PPL|1|A2|A|1070
8PPL|1|A2|G|1071
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AO
- 40S ribosomal protein S14
- Chain Aa
- 40S ribosomal protein S26
- Chain Ip
- Eukaryotic translation initiation factor 1
- Chain Iy
- Eukaryotic translation initiation factor 3 subunit C
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