IL_8PPL_069

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

A(OMU)UG*CUCGAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPL|1|A2|A|1287
8PPL|1|A2|OMU|1288
8PPL|1|A2|U|1289
8PPL|1|A2|G|1290
*
8PPL|1|A2|C|1309
8PPL|1|A2|U|1310
8PPL|1|A2|C|1311
8PPL|1|A2|G|1312
8PPL|1|A2|A|1313
8PPL|1|A2|U|1314

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein S10

Chain AM

40S ribosomal protein S12

Chain Ad

40S ribosomal protein S29

Chain Af

Ubiquitin-40S ribosomal protein S27a