IL_8PPL_071

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(OMG)U*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_071 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.1621

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8PPL|1|A2|G|1327
8PPL|1|A2|OMG|1328
8PPL|1|A2|U|1329
*
8PPL|1|A2|G|1500
8PPL|1|A2|C|1501
8PPL|1|A2|C|1502

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S3

Chain Af

Ubiquitin-40S ribosomal protein S27a