IL_8PPL_072

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8PPL|1|A2|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_072 not in the Motif Atlas

Homologous match to IL_4V88_450

Geometric discrepancy: 0.1245

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

8PPL|1|A2|U|1329
8PPL|1|A2|G|1330
8PPL|1|A2|C|1331
8PPL|1|A2|A|1332
8PPL|1|A2|U|1333
*
8PPL|1|A2|A|1498
8PPL|1|A2|U|1499
8PPL|1|A2|G|1500

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S3

Chain AK

40S ribosomal protein S10

Chain AU

40S ribosomal protein S20

Chain Ad

40S ribosomal protein S29

Chain Af

Ubiquitin-40S ribosomal protein S27a