IL_8PPL_074
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- C(4AC)G*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 8PPL|1|A2|A|1489
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_074 not in the Motif Atlas
- Geometric match to IL_6IA2_002
- Geometric discrepancy: 0.152
- The information below is about IL_6IA2_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 215
Unit IDs
8PPL|1|A2|C|1336
8PPL|1|A2|4AC|1337
8PPL|1|A2|G|1338
*
8PPL|1|A2|C|1488
8PPL|1|A2|A|1489
8PPL|1|A2|OMG|1490
8PPL|1|A2|G|1491
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AC
- 40S ribosomal protein S2
- Chain AD
- 40S ribosomal protein S3
- Chain AQ
- 40S ribosomal protein S16
- Chain AU
- 40S ribosomal protein S20
- Chain Ad
- 40S ribosomal protein S29
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