IL_8PPL_083
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_083 not in the Motif Atlas
- Geometric match to IL_3SZX_002
- Geometric discrepancy: 0.1088
- The information below is about IL_3SZX_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 215
Unit IDs
8PPL|1|A2|A|1537
8PPL|1|A2|C|1538
8PPL|1|A2|U|1539
*
8PPL|1|A2|A|1594
8PPL|1|A2|U|1595
8PPL|1|A2|U|1596
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AF
- 40S ribosomal protein S5
- Chain AQ
- 40S ribosomal protein S16
- Chain AS
- Small ribosomal subunit protein uS13
- Chain AT
- Small ribosomal subunit protein eS19
- Chain AZ
- 40S ribosomal protein S25
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