IL_8PPL_086
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GGGAUCG*CAUGAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_086 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.0705
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
8PPL|1|A2|G|1604
8PPL|1|A2|G|1605
8PPL|1|A2|G|1606
8PPL|1|A2|A|1607
8PPL|1|A2|U|1608
8PPL|1|A2|C|1609
8PPL|1|A2|G|1610
*
8PPL|1|A2|C|1629
8PPL|1|A2|A|1630
8PPL|1|A2|U|1631
8PPL|1|A2|G|1632
8PPL|1|A2|A|1633
8PPL|1|A2|A|1634
8PPL|1|A2|C|1635
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AF
- 40S ribosomal protein S5
- Chain AS
- Small ribosomal subunit protein uS13
- Chain AT
- Small ribosomal subunit protein eS19
Coloring options: