IL_8PPL_089

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_089 not in the Motif Atlas

Homologous match to IL_4V88_465

Geometric discrepancy: 0.1026

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8PPL|1|A2|G|1706
8PPL|1|A2|U|1707
8PPL|1|A2|C|1708
*
8PPL|1|A2|G|1826
8PPL|1|A2|U|1827
8PPL|1|A2|C|1828

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

60S ribosomal protein L41

Chain Ip

Eukaryotic translation initiation factor 1

Chain Iq

Eukaryotic translation initiation factor 1A, X-chromosomal