IL_8PPL_092

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_092 not in the Motif Atlas

Homologous match to IL_8C3A_475

Geometric discrepancy: 0.2267

The information below is about IL_8C3A_475

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8PPL|1|A2|C|1717
8PPL|1|A2|G|1718
8PPL|1|A2|A|1719
8PPL|1|A2|U|1720
*
8PPL|1|A2|A|1813
8PPL|1|A2|G|1814
8PPL|1|A2|A|1815
8PPL|1|A2|G|1816

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

60S ribosomal protein L41