IL_8PPL_117

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AC*GAA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_117 not in the Motif Atlas

Homologous match to IL_8P9A_412

Geometric discrepancy: 0.3515

The information below is about IL_8P9A_412

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

8PPL|1|A2|A|802
8PPL|1|A2|C|803
*
8PPL|1|A2|G|860
8PPL|1|A2|A|861
8PPL|1|A2|A|862
8PPL|1|A2|PSU|863

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AH

40S ribosomal protein S7

Chain AL

40S ribosomal protein S11

Chain AW

40S ribosomal protein S15a

Chain AX

40S ribosomal protein S23