IL_8PPL_118
3D structure
- PDB id
- 8PPL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GAAAAAA(PSU)(PSU)*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PPL_118 not in the Motif Atlas
- Homologous match to IL_8C3A_503
- Geometric discrepancy: 0.3911
- The information below is about IL_8C3A_503
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44416.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8PPL|1|A2|G|807
8PPL|1|A2|A|808
8PPL|1|A2|A|809
8PPL|1|A2|A|810
8PPL|1|A2|A|811
8PPL|1|A2|A|812
8PPL|1|A2|A|813
8PPL|1|A2|PSU|814
8PPL|1|A2|PSU|815
*
8PPL|1|A2|A|849
8PPL|1|A2|C|850
8PPL|1|A2|C|851
8PPL|1|A2|G|852
8PPL|1|A2|C|853
8PPL|1|A2|A|854
8PPL|1|A2|G|855
8PPL|1|A2|C|856
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AE
- 40S ribosomal protein S4, X isoform
- Chain AJ
- 40S ribosomal protein S9
- Chain AL
- 40S ribosomal protein S11
- Chain AW
- 40S ribosomal protein S15a
Coloring options: