IL_8PPL_128

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(PSU)GG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PPL_128 not in the Motif Atlas

Homologous match to IL_8P9A_442

Geometric discrepancy: 0.3943

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8PPL|1|A2|PSU|1347
8PPL|1|A2|G|1348
8PPL|1|A2|G|1349
*
8PPL|1|A2|C|1380
8PPL|1|A2|G|1381
8PPL|1|A2|A|1382

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein SA

Chain AC

40S ribosomal protein S2

Chain AD

40S ribosomal protein S3

Chain AR

40S ribosomal protein S17