IL_8PPL_131

3D structure

PDB id

8PPL (explore in PDB, NAKB, or RNA 3D Hub)

Description

MERS-CoV Nsp1 bound to the human 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAUUG*UAGAG

Length

11 nucleotides

Bulged bases

8PPL|1|A2|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PPL|1|A2|C|1717
8PPL|1|A2|G|1718
8PPL|1|A2|A|1719
8PPL|1|A2|U|1720
8PPL|1|A2|U|1721
8PPL|1|A2|G|1722
*
8PPL|1|A2|U|1812
8PPL|1|A2|A|1813
8PPL|1|A2|G|1814
8PPL|1|A2|A|1815
8PPL|1|A2|G|1816

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AX

40S ribosomal protein S23

Chain Ah

60S ribosomal protein L41