IL_8PV1_059
3D structure
- PDB id
- 8PV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.56 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV1_059 not in the Motif Atlas
- Geometric match to IL_4V9F_050
- Geometric discrepancy: 0.0911
- The information below is about IL_4V9F_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.3
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 36
Unit IDs
8PV1|1|C1|G|1475
8PV1|1|C1|G|1476
8PV1|1|C1|U|1477
8PV1|1|C1|U|1478
*
8PV1|1|C1|A|1815
8PV1|1|C1|C|1816
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LX
- 60S ribosomal protein L25-like protein
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Ribosomal protein eL39
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