IL_8PV2_007
3D structure
- PDB id
- 8PV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AG*CGUUGU
- Length
- 8 nucleotides
- Bulged bases
- 8PV2|1|C1|U|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV2_007 not in the Motif Atlas
- Homologous match to IL_8C3A_007
- Geometric discrepancy: 0.0549
- The information below is about IL_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19724.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8PV2|1|C1|A|124
8PV2|1|C1|G|125
*
8PV2|1|C1|C|140
8PV2|1|C1|G|141
8PV2|1|C1|U|142
8PV2|1|C1|U|143
8PV2|1|C1|G|144
8PV2|1|C1|U|145
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CC
- Ribosome biogenesis protein ERB1
- Chain CJ
- Pescadillo homolog
- Chain LG
- 60S ribosomal protein L8
- Chain LN
- Ribosomal protein L15
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