IL_8PV2_066

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UUUGC*GGAAUA

Length

11 nucleotides

Bulged bases

8PV2|1|C1|U|1609, 8PV2|1|C1|U|1795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PV2|1|C1|U|1607
8PV2|1|C1|U|1608
8PV2|1|C1|U|1609
8PV2|1|C1|G|1610
8PV2|1|C1|C|1611
*
8PV2|1|C1|G|1791
8PV2|1|C1|G|1792
8PV2|1|C1|A|1793
8PV2|1|C1|A|1794
8PV2|1|C1|U|1795
8PV2|1|C1|A|1796

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CC

Ribosome biogenesis protein ERB1

Chain CJ

Pescadillo homolog

Chain LZ

60S ribosomal protein L27