IL_8PV2_099
3D structure
- PDB id
- 8PV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 8PV2|1|C1|G|2485, 8PV2|1|C1|G|2544, 8PV2|1|C1|G|2545
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV2_099 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.0947
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8PV2|1|C1|A|2483
8PV2|1|C1|U|2484
8PV2|1|C1|G|2485
8PV2|1|C1|A|2486
8PV2|1|C1|A|2487
8PV2|1|C1|G|2488
8PV2|1|C1|C|2489
*
8PV2|1|C1|G|2543
8PV2|1|C1|G|2544
8PV2|1|C1|G|2545
8PV2|1|C1|U|2546
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L2-like protein
- Chain LG
- 60S ribosomal protein L8
- Chain LX
- 60S ribosomal protein L25-like protein
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