IL_8PV2_134

3D structure

PDB id

8PV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8PV2|1|C1|U|3282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV2_134 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.2147

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8PV2|1|C1|G|3281
8PV2|1|C1|U|3282
8PV2|1|C1|A|3283
*
8PV2|1|C1|U|3304
8PV2|1|C1|C|3305

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CQ

Ribosome biogenesis protein RLP24

Chain Cb

Zinc finger domain-containing protein