IL_8PV3_011
3D structure
- PDB id
- 8PV3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAG*CAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV3_011 not in the Motif Atlas
- Geometric match to IL_4KZD_002
- Geometric discrepancy: 0.1399
- The information below is about IL_4KZD_002
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
8PV3|1|C1|C|168
8PV3|1|C1|G|169
8PV3|1|C1|A|170
8PV3|1|C1|G|171
*
8PV3|1|C1|C|235
8PV3|1|C1|A|236
8PV3|1|C1|A|237
8PV3|1|C1|G|238
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain Lh
- dolichyl-diphosphooligosaccharide--protein glycotransferase
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