IL_8PV3_058

3D structure

PDB id

8PV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGG*C(OMC)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV3_058 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1321

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8PV3|1|C1|G|1468
8PV3|1|C1|G|1469
8PV3|1|C1|G|1470
*
8PV3|1|C1|C|1835
8PV3|1|C1|OMC|1836
8PV3|1|C1|C|1837

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LR

Ribosomal protein L19

Chain Lg

Ribosomal protein l34-like protein