IL_8PV3_091

3D structure

PDB id

8PV3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8PV3|1|C1|A|2767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV3_091 not in the Motif Atlas

Homologous match to IL_8C3A_099

Geometric discrepancy: 0.089

The information below is about IL_8C3A_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8PV3|1|C1|G|2375
8PV3|1|C1|A|2376
*
8PV3|1|C1|U|2766
8PV3|1|C1|A|2767
8PV3|1|C1|C|2768
8PV3|1|C1|C|2769

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain Cd

Nucleolar GTP-binding protein 2