IL_8PV3_153
3D structure
- PDB id
- 8PV3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV3_153 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.112
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.3
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8PV3|1|C1|C|2848
8PV3|1|C1|A|2849
8PV3|1|C1|U|2850
8PV3|1|C1|A|2851
*
8PV3|1|C1|U|2868
8PV3|1|C1|A|2869
8PV3|1|C1|A|2870
8PV3|1|C1|G|2871
8PV3|1|C1|C|2872
8PV3|1|C1|G|2873
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain CL
- Putative GTP binding protein
- Chain CO
- DUF2423 domain-containing protein
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LH
- 60S ribosomal protein L9-like protein
- Chain LV
- 60S ribosomal protein l23-like protein
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