IL_8PV5_041

3D structure

PDB id

8PV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CUU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV5_041 not in the Motif Atlas

Homologous match to IL_8C3A_047

Geometric discrepancy: 0.2858

The information below is about IL_8C3A_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8PV5|1|C1|C|1052
8PV5|1|C1|U|1053
8PV5|1|C1|U|1054
*
8PV5|1|C1|G|1070
8PV5|1|C1|U|1071
8PV5|1|C1|G|1072

Current chains

Chain C1

26S rRNA

Nearby chains