IL_8PV5_052

3D structure

PDB id

8PV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GACUG*CUC

Length

8 nucleotides

Bulged bases

8PV5|1|C1|A|1246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV5_052 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.1982

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8PV5|1|C1|G|1245
8PV5|1|C1|A|1246
8PV5|1|C1|C|1247
8PV5|1|C1|U|1248
8PV5|1|C1|G|1249
*
8PV5|1|C1|C|1258
8PV5|1|C1|U|1259
8PV5|1|C1|C|1260

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CF

Large ribosomal subunit protein uL10

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain LK

60S ribosomal protein L12-like protein