IL_8PV5_064

3D structure

PDB id

8PV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

8PV5|1|C1|U|1799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV5_064 not in the Motif Atlas

Geometric match to IL_4WF9_030

Geometric discrepancy: 0.3049

The information below is about IL_4WF9_030

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8PV5|1|C1|G|1604
8PV5|1|C1|G|1605
*
8PV5|1|C1|U|1798
8PV5|1|C1|U|1799
8PV5|1|C1|C|1800

Current chains

Chain C1

26S rRNA

Nearby chains