IL_8PV5_091

3D structure

PDB id

8PV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

G(OMG)G*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV5_091 not in the Motif Atlas

Geometric match to IL_4AOB_005

Geometric discrepancy: 0.1472

The information below is about IL_4AOB_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8PV5|1|C1|G|2357
8PV5|1|C1|OMG|2358
8PV5|1|C1|G|2359
*
8PV5|1|C1|C|2943
8PV5|1|C1|C|2944
8PV5|1|C1|U|2945

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3-like protein

Chain LO

60S ribosomal protein L16-like protein

Chain LP

60S ribosomal protein l17-like protein