IL_8PV5_097

3D structure

PDB id

8PV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8PV5|1|C1|G|2565

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV5_097 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.1937

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8PV5|1|C1|U|2386
8PV5|1|C1|A|2387
8PV5|1|C1|G|2388
*
8PV5|1|C1|U|2563
8PV5|1|C1|G|2564
8PV5|1|C1|G|2565
8PV5|1|C1|G|2566

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2

Chain LA

60S ribosomal protein L2-like protein

Chain LN

Ribosomal protein L15