IL_8PV5_123
3D structure
- PDB id
- 8PV5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GUU*AC
- Length
- 5 nucleotides
- Bulged bases
- 8PV5|1|C1|U|3122
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV5_123 not in the Motif Atlas
- Geometric match to IL_6UFG_004
- Geometric discrepancy: 0.2245
- The information below is about IL_6UFG_004
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
8PV5|1|C1|G|3121
8PV5|1|C1|U|3122
8PV5|1|C1|U|3123
*
8PV5|1|C1|A|3223
8PV5|1|C1|C|3224
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CO
- DUF2423 domain-containing protein
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain Lf
- 60S ribosomal protein l33-like protein
- Chain Lq
- Putative 60S ribosomal protein
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