IL_8PV5_139

3D structure

PDB id

8PV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GAAAGCAC*GUUAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PV5|1|C4|G|21
8PV5|1|C4|A|22
8PV5|1|C4|A|23
8PV5|1|C4|A|24
8PV5|1|C4|G|25
8PV5|1|C4|C|26
8PV5|1|C4|A|27
8PV5|1|C4|C|28
*
8PV5|1|C4|G|52
8PV5|1|C4|U|53
8PV5|1|C4|U|54
8PV5|1|C4|A|55
8PV5|1|C4|A|56
8PV5|1|C4|G|57
8PV5|1|C4|C|58

Current chains

Chain C4

5S rRNA

Nearby chains

Chain LD

60S ribosomal protein l5-like protein

Chain LJ

Putative ribosomal protein