IL_8PV6_041

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GGG*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV6_041 not in the Motif Atlas

Geometric match to IL_3RW6_004

Geometric discrepancy: 0.1744

The information below is about IL_3RW6_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8PV6|1|C1|G|999
8PV6|1|C1|G|1000
8PV6|1|C1|G|1001
*
8PV6|1|C1|U|1016
8PV6|1|C1|U|1017
8PV6|1|C1|C|1018

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CR

Protein SDA1

Chain Cd

Nucleolar GTP-binding protein 2