IL_8PV6_050

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8PV6|1|C1|C|1191

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV6_050 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.3141

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8PV6|1|C1|G|1190
8PV6|1|C1|C|1191
8PV6|1|C1|G|1192
*
8PV6|1|C1|C|1279
8PV6|1|C1|C|1280

Current chains

Chain C1

26S rRNA

Nearby chains

Chain C4

5S ribosomal RNA; 5S rRNA

Chain CF

Large ribosomal subunit protein uL10

Chain CK

Ribosome biogenesis protein NSA2 homolog

Chain LS

60S ribosomal protein L20