IL_8PV6_103

3D structure

PDB id

8PV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV6_103 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.2687

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8PV6|1|C1|G|2583
8PV6|1|C1|C|2584
8PV6|1|C1|A|2585
*
8PV6|1|C1|U|2611
8PV6|1|C1|C|2612

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CR

Protein SDA1

Chain CS

Pre-rRNA-processing protein IPI1