IL_8PV7_009

3D structure

PDB id

8PV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV7_009 not in the Motif Atlas

Homologous match to IL_5TBW_009

Geometric discrepancy: 0.2672

The information below is about IL_5TBW_009

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8PV7|1|C1|A|158
8PV7|1|C1|U|159
8PV7|1|C1|G|160
*
8PV7|1|C1|C|250
8PV7|1|C1|U|251

Current chains

Chain C1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Lh

dolichyl-diphosphooligosaccharide--protein glycotransferase