IL_8PV7_025
3D structure
- PDB id
- 8PV7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.12 Å
Loop
- Sequence
- GUUUG*CGCAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV7_025 not in the Motif Atlas
- Homologous match to IL_8C3A_024
- Geometric discrepancy: 0.0724
- The information below is about IL_8C3A_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74284.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PV7|1|C1|G|668
8PV7|1|C1|U|669
8PV7|1|C1|U|670
8PV7|1|C1|U|671
8PV7|1|C1|G|672
*
8PV7|1|C1|C|684
8PV7|1|C1|G|685
8PV7|1|C1|C|686
8PV7|1|C1|A|687
8PV7|1|C1|C|688
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LL
- 60S ribosomal protein L13
- Chain LN
- Ribosomal protein L15
- Chain La
- 60S ribosomal protein L28-like protein
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