IL_8PV7_033

3D structure

PDB id

8PV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV7_033 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0808

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8PV7|1|C1|G|851
8PV7|1|C1|G|852
8PV7|1|C1|U|853
8PV7|1|C1|U|854
*
8PV7|1|C1|A|870
8PV7|1|C1|U|871
8PV7|1|C1|C|872

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Lj

Ribosomal protein L37