IL_8PV7_063

3D structure

PDB id

8PV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

8PV7|1|C1|U|1801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV7_063 not in the Motif Atlas

Geometric match to IL_5TBW_053

Geometric discrepancy: 0.307

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8PV7|1|C1|G|1603
8PV7|1|C1|G|1604
*
8PV7|1|C1|C|1800
8PV7|1|C1|U|1801
8PV7|1|C1|C|1802

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CJ

Pescadillo homolog

Chain Ce

Ribosome biogenesis protein NOP53

Chain Lg

Ribosomal protein l34-like protein

Chain Lk

60S ribosomal protein L38-like protein