IL_8PV7_149

3D structure

PDB id

8PV7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 1 - pre-5S rotation (Arx1/Nog2 state) - Composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.12 Å

Loop

Sequence

CC(OMG)*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV7_149 not in the Motif Atlas

Homologous match to IL_8P9A_255

Geometric discrepancy: 0.0901

The information below is about IL_8P9A_255

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8PV7|1|C1|C|785
8PV7|1|C1|C|786
8PV7|1|C1|OMG|787
*
8PV7|1|C1|C|920
8PV7|1|C1|U|921
8PV7|1|C1|G|922

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Cd

Nucleolar GTP-binding protein 2

Chain LC

60S ribosomal protein L4-like protein