IL_8PV8_029

3D structure

PDB id

8PV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV8_029 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.3608

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8PV8|1|C1|G|736
8PV8|1|C1|A|737
*
8PV8|1|C1|U|758
8PV8|1|C1|U|759
8PV8|1|C1|U|760

Current chains

Chain C1

26S rRNA

Nearby chains

Chain La

60S ribosomal protein L28-like protein

Chain Lb

60S ribosomal protein L29